RnoEX0068255 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11257682-11258855:+
Coord C1 exon
chr3:11257682-11257732
Coord A exon
chr3:11257912-11258001
Coord C2 exon
chr3:11258709-11258855
Length
90 bp
Sequences
Splice sites
3' ss Seq
AGCACTGACTGTCTTCCCAGAGG
3' ss Score
5.62
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTGGCTAGGAGGATTCGATGGGAACTTTCTGTGGAACCGAATTGGAGCAG
Seq A exon
AGGACCAGGACGTGATTTCTAGCTCCCACACGATGGAGTACAACCACTGTAACTCCGGTTTCGGGGAGTTTGCCACTTTCTTTTGGCTAG
Seq C2 exon
AATACAGTAGCAATGTGCCTGTATGGTCCTTACGCCTGCTGCCGGCGCTTGCTGGGGCCCTGTCAGTACCCATGGCCTACCAGATAGTGTTGGAGCTCCACTTTTCCCACTGTACTGCCATGGGAGCCGCCCTGCTGATGCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(19.3=100)
A:
PF0236613=PMT=PD(14.8=41.9),PF0236613=PMT=PU(5.4=32.3)
C2:
PF0236613=PMT=FE(19.8=100)
Main Inclusion Isoform:
ENSRNOT00000015214fB11083
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAGGAGGATTCGATGGG
R:
CCATGGCAGTACAGTGGGAAA
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]