RnoEX0068375 @ rn6
Exon Skipping
Gene
ENSRNOG00000016992 | Potec
Description
POTE ankyrin domain family, member C [Source:RGD Symbol;Acc:1308454]
Coordinates
chr17:89650315-89675571:-
Coord C1 exon
chr17:89675434-89675571
Coord A exon
chr17:89665772-89665846
Coord C2 exon
chr17:89650315-89650376
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTCTACTCCTCCTAGTTC
3' ss Score
7.85
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAATTCTCTCATGTATGCTGTAAGATGTGACTGTCCAGTTATGGTCAACCTTATTCTTCAACAAGGTGCTGACATAAATTTGAAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAGGGTGATCGTGATGT
Seq A exon
TTCCTTTCCACCTCCCCTCCTCTATGGATCCACTCCCTTGCTGTTTCTCATTAGGGAAAAACAGACTTCTAAGAG
Seq C2 exon
GAGGACAATACTTTTGGAGTATGAATATAACCTGATACAAAGATTAAGAGAGAGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016992-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.0=100)
A:
PF127962=Ank_2=FE(21.6=100)
C2:
PF127962=Ank_2=PD(16.3=68.2)
Main Inclusion Isoform:
ENSRNOT00000052342fB11109
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTAAGATGTGACTGTCCA
R:
TCTCTCTCTTAATCTTTGTATCAGGT
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]