RnoEX0068378 @ rn6
Exon Skipping
Gene
ENSRNOG00000016992 | Potec
Description
POTE ankyrin domain family, member C [Source:RGD Symbol;Acc:1308454]
Coordinates
chr17:89634730-89650376:-
Coord C1 exon
chr17:89650315-89650376
Coord A exon
chr17:89649605-89649610
Coord C2 exon
chr17:89634730-89634760
Length
6 bp
Sequences
Splice sites
3' ss Seq
CCATAATTTCCCCTTTCCAGTTT
3' ss Score
8.12
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAGGACAATACTTTTGGAGTATGAATATAACCTGATACAAAGATTAAGAGAGAGAAATCAAG
Seq A exon
TTTCAG
Seq C2 exon
AATTTCAGAGTTCTGAAGACTCTTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016992-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.455
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(16.3=68.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000052342fB11110
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]