RnoEX0068379 @ rn6
Exon Skipping
Gene
ENSRNOG00000016992 | Potec
Description
POTE ankyrin domain family, member C [Source:RGD Symbol;Acc:1308454]
Coordinates
chr17:89677559-89683480:-
Coord C1 exon
chr17:89682901-89683480
Coord A exon
chr17:89679000-89679114
Coord C2 exon
chr17:89677559-89677665
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACACTGTGATTTCTCGACAGGAA
3' ss Score
8.94
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACGGAGGTTGGGAGAGATTTGGCTAGGCTATGACAAGAGATAATATTTGGATCAGAAGGGATGGGCTTATTACATCATTGATATTTAGATATTAAAAACAGGAGGGGTGGACTTATAATTCGATACGAGATGGGGAGAGCCTGCTTATAATAACGTTGATACTGGGTCAGTTAACGGCTGGCTTGCTATATATAACTTTGCCTGAAATGGGAGGAAAGTGCAGCCGCGGGGGAGAGAGGAGGCCTCTGGGTTTCCCAGGCTTCTCTGCGCTGTGTTGCTGTCAGATAAAGAGTAGGGAAGAGACACCCTTGGGTTTCTGTGATATTAAGGCACGGAGAAACAACTCGTGCTTTGGAAGGGAGGATCCTGCTTATTTAGACATGGCATACTTCCCTGACAATGATCTGCACATGGCGGCCTGTGCAGGAGATTTACCTTTTATGCGGCTGTACTTCACTCTGGGCAAATACGAAGTCAATCACAGAGACAGGGAAAATAG
Seq A exon
GAATGCCATGCACTTTGCCTGCTTCTATGGACATTTAGAACTGGTGATATATCTCTGGAGGCGTGGCTGTGAGATTAATGTGTGTGACAATCATAACATCACACCCCTGATGAAG
Seq C2 exon
GATAACCTCACGCCACTCTTGCTTGCTCTCAAGGAGAACAGACTGAAGATGGCGCAATTCTTAGTCAGGATGGAAGCAAGTGTGCATGCCGTTGACTCACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016992_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(18.8=22.5)
A:
PF138571=Ank_5=FE(79.2=100)
C2:
PF127962=Ank_2=PU(32.6=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCGTGCTTTGGAAGGG
R:
GCACACTTGCTTCCATCCTGA
Band lengths:
245-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]