RnoEX0068928 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:29978739-30133445:+
Coord C1 exon
chr4:29978739-29980348
Coord A exon
chr4:29989761-29989888
Coord C2 exon
chr4:30133313-30133445
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATTCTAAAATCCTTCCTAGACT
3' ss Score
4.44
5' ss Seq
TAGGTATAC
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCACGGAAGCTGAGGACGTCACAGCTCAACCAGACACTCCGGACAGCACTGATAAAGACAGTCCTGGAGAACCTTCTGCTGAAAGCCAGGCAATGCCCAAGTCTAACACCCTCTCCCGACCGAAGGAGCCGTTAGAAGATGCTGAAGCTAATGTGGTCGGGAGTGAGGCAGAGCAGCCACAGAGGAGAGACCTGACAGGTGGTGGTGACCTCACCTCCCCGGACGCGTCTGCTTCCAGCTGTGGGAAAGAAGTACCTGAAGACTCGAACAGTTTTGAGGGCTCCCATGTATACATGCATAGTGACTATAACGTGTATCGGGTGAGATCCAGGTATAACTCGGACTGGGGAGAGACGGGCACAGAGCAGGATGAGGGGGACGACAGCGATGAGAACAATTACTATCAGCCCGATATGGAGTACTCGGAAATTGTTGGCTTGCCGCAAGAGGAAGAAATCCCAGCAAATAGGAAAATTAAGTTTAGTTGTGCTCCGATTAAG
Seq A exon
ACTCCGATGTATTCTTCTTCAGAGAGGTCGTGCTATCGTCACGTTGCATTGGAAGACTGTTTGAGGCCAGGACCAAGCATTGTTTCAGAGGTTTTCTGTAGTAGCCAACACTGCCACTCAGAACTTAG
Seq C2 exon
GTTTTCAACACGTACTCCAATGAAGACTATGACAGGAGGAATGATGACGTTGACCCTGTGGCTGCATCTGCTGAGTACGAACTTGAAAAGCGAGTAGAAAAGCTGGAACTTTTCCCAGTGGAACTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=0.000 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0059519=PDZ=PU(5.9=11.1)
Main Inclusion Isoform:
ENSRNOT00000011756fB11213
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTCGGACTGGGGAGAGAC
R:
TTCGTACTCAGCAGATGCAGC
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]