RnoEX0069277 @ rn6
Exon Skipping
Gene
ENSRNOG00000021920 | Pramel6
Description
preferentially expressed antigen in melanoma-like 6 [Source:RGD Symbol;Acc:1565946]
Coordinates
chr3:75558684-75561066:+
Coord C1 exon
chr3:75558684-75558784
Coord A exon
chr3:75559550-75559608
Coord C2 exon
chr3:75560753-75561066
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTATTTTTGAGACAGTCC
3' ss Score
1.8
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TGTAAATAGTCAGAGGAGCCAGGGAAAACTTCAGGGTTTTGGAGCATTGAACCGCTTGGAGTTGCTAGTTGGGATCTAGAGACTGTCAGCGTTCACATCAG
Seq A exon
TCCCACTCTGAATATCAGTGTGACATTGAACTCCAGGAAATTCTGAAGGGATTTCAAAC
Seq C2 exon
GATCATTTTCCCTGAAATCCAGTCACAATGAGCCTTGACTCCCCACCCACACTCTTCCACTTGGCAAGACACACTCTACTGATGGAGGAAGCTTTAGCCATTTCTGCTCTAGAGGAACTGCCCTGTCATCTATTCCCAGAGTTGTTCAAGGGGGCCTTCACTGACAGGCATACAAACGTCCTGACTGCAATGGTGTCTATTTGGCCTTTACCATGCCTTCCTGTAGGAACCCTGTTGGAGGAGCCTCACCTGGAGACTTTGAAAGCACTGCTTGATGGGTTAAATGTCCAGGTGACACAGACGTGTAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021920-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGGGAAAACTTCAGGG
R:
GTGGGGAGTCAAGGCTCATTG
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]