RnoEX0069279 @ rn6
Exon Skipping
Gene
ENSRNOG00000021920 | Pramel6
Description
preferentially expressed antigen in melanoma-like 6 [Source:RGD Symbol;Acc:1565946]
Coordinates
chr3:75560753-75562086:+
Coord C1 exon
chr3:75560753-75561066
Coord A exon
chr3:75561289-75561413
Coord C2 exon
chr3:75561502-75562086
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTGTTTTTCATACAGGCA
3' ss Score
9.59
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GATCATTTTCCCTGAAATCCAGTCACAATGAGCCTTGACTCCCCACCCACACTCTTCCACTTGGCAAGACACACTCTACTGATGGAGGAAGCTTTAGCCATTTCTGCTCTAGAGGAACTGCCCTGTCATCTATTCCCAGAGTTGTTCAAGGGGGCCTTCACTGACAGGCATACAAACGTCCTGACTGCAATGGTGTCTATTTGGCCTTTACCATGCCTTCCTGTAGGAACCCTGTTGGAGGAGCCTCACCTGGAGACTTTGAAAGCACTGCTTGATGGGTTAAATGTCCAGGTGACACAGACGTGTAATTCCAG
Seq A exon
GCATAAGTGGAATGAAGCTGGCATTAATGGAATGAAGGGAAGACAGACAGGGCTGCAACTGTTTTTCTTGAAACAGATTCCTTTTTTGCTGAAGATGAGACCCAAGGCTTGATATTATGCATATG
Seq C2 exon
GTGCAAACTCAGAGTTCTTGATTTGAGGAGGAACATGCACCATGAGTTCTGGGGCATGAAGGCTGTCTCCCATGAAGATAACTGCTCACTACAGATCATGGCACAGAAACAGCCCATGGAGACCTGTCCTGACCCTGAGAGGGAGAATCCTTTTAAGGTGGTAACCGATTTTGAACTCAGGGATGCCAGTTTAGATGAATGGACCATATACTTGTTGCAGTGGGTCGAGCAGAGAAAATCATCCATTCATCTATGCTGTAGGAAGCTGCACGTTTGGGATTCACCATTCTCTACTGTCATAAAGATCTTGGAATTCGTGGATTTAAACTGTATCCTGGAGCTACGGCTGAGTCATTGGAGGTTTGAGTTCCTGGTAGACCTTGTTCCTTACCTGGAGCAGATGAATAATCTTCACACCCTCATGCTAGAGGGAATTAAGAATTCCTTAAATTTTACTGCTTGGGAAGAAGAGGAAGATGAGTGGCAAGGCTCATTTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000035844fB11269
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCTTTACCATGCCTTCC
R:
CTCAGGGTCAGGACAGGTCTC
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]