RnoEX0070294 @ rn6
Exon Skipping
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11223680-11226276:+
Coord C1 exon
chr3:11223680-11223921
Coord A exon
chr3:11225505-11225507
Coord C2 exon
chr3:11226081-11226276
Length
3 bp
Sequences
Splice sites
3' ss Seq
CAGCTTCTTTCTAGAGGGAGCAG
3' ss Score
-19.36
5' ss Seq
CAGGTGTAT
5' ss Score
3.09
Exon sequences
Seq C1 exon
GCTCCCCAGAATTCCCTGTGCAAGAAGCACCCACCATGTTCTTGGAAGAGACACCTGCAACGTCCCCAACAGTGGCTCAGAGCAACAACAGCAGCAGCAGCAGCAGTAGCAGCATCGAGGAGGAAGTCCGGGAGGCTGGGTCCCCTGCACAGGAGTTCAGCAAGTACCAGAAGTCCCTTCCTCCCCGTTTCCAGCGCCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAG
Seq A exon
CAG
Seq C2 exon
GAGCAGCTGTACAAGATGCAACACTGGCAGCCGGTGTACCCCCCACCTTCTCACCCCCAGCGTACCTTCTACCCACACCACCCCCAGATGCTGGGCTTTGACCCACGGTGGATGATGATGCCCTCCTACATGGACCCGCGCATCACCCCGACGCGCACACCCGTGGACTTCTACCCCTCAGCCCTGCATCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000066368fB11455
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACAACAGCAGCAGCAG
R:
GGGTGGTGTGGGTAGAAGGTA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]