RnoEX0070329 @ rn6
Exon Skipping
Gene
ENSRNOG00000047969 | Prss21
Description
serine protease 21 [Source:RGD Symbol;Acc:727870]
Coordinates
chr10:13215960-13219279:+
Coord C1 exon
chr10:13215960-13216243
Coord A exon
chr10:13216387-13216532
Coord C2 exon
chr10:13219125-13219279
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCTTACTTCTGCCTACAAGGAG
3' ss Score
4.11
5' ss Seq
TAAGTGAGC
5' ss Score
3.93
Exon sequences
Seq C1 exon
GGACAATGATCCTTTCGACTGGACAGTCCAGTTTGGCGAGCTGACCTCCAGGCCGTCTCTCTGGAACCTACAGGCTTATTCCAACCGTTACCAAATAGAAGATATTTTCCTGAGCCCCAAGTACACGGAGCAGTTTCCCCATGACATAGCTCTGCTGAAGCTGTCATCGCCTGTCACCTACAGTAACTTCATCCAGCCCATCTGCCTCCTGAACTCCACATACAAGTTTGCGAACCGAACTGACTGCTGGGTGACCGGCTGGGGGGCTATTGGAGAGGATGAGA
Seq A exon
GAGGACAGGAGCCAGTCCTTTCCTTCCAGACAGGAACTCAGAGGTGCCAGGGAGGCCTGAAGAGGCAGGGACCCCATAGGGCCTGTAGCATGGCTTCCACAACATTGCTTCTATGAACCTCCAGTTTCAGCAGGCACCAGTCCTAA
Seq C2 exon
GTCTGCCACTTCCCAACAACCTCCAGGAAGTGCAGGTAGCTATCATCAACAACACCATGTGTAACCATTTGTTCAAAAAGCCAGACTTCCGAATAAACATCTGGGGAGACATGGTTTGCGCTGGCAGTCCTGAAGGCGGCAAGGATGCCTGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047969_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.1=100)
A:
PF0008921=Trypsin=PD(17.2=74.4)
C2:
PF0008921=Trypsin=FE(21.5=100)
Main Inclusion Isoform:
ENSRNOT00000073065fB11464
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCTCTCTGGAACCTACA
R:
GAGGTTGTTGGGAAGTGGCAG
Band lengths:
256-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]