RnoEX0071108 @ rn6
Exon Skipping
Gene
ENSRNOG00000018457 | Ptpa
Description
protein phosphatase 2 phosphatase activator [Source:RGD Symbol;Acc:1308354]
Coordinates
chr3:9003980-9007987:+
Coord C1 exon
chr3:9003980-9004080
Coord A exon
chr3:9006162-9006230
Coord C2 exon
chr3:9007880-9007987
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACCCCGCCCATCCCCCTCAGTTA
3' ss Score
7.7
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ACCACCCCCACCTGGAGCCCAGACATTTTGTGGACGAGAAGGCGGTGAGCGAAAACCACAAGGACTACATGTTCCTCCAGTGCATCCTGTTCATCACCGAG
Seq A exon
TTACTGACAGAGGAACCATTTACAAAAGGCCGATTCTCTGGGGAGTGGAGAGGCAGGAACGCAGCGTCT
Seq C2 exon
ATGAAGACCGGCCCCTTTGCAGAGCACTCCAACCAGCTGTGGAACATCAGTGCTGTCCCGTCCTGGTCTAAAGTGAACCAGGGCCTCATTCGCATGTATAAGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018457_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309510=PTPA=FE(11.0=100)
A:
PF0309510=PTPA=PD(3.6=39.1),PF0309510=PTPA=PU(4.6=13.0)
C2:
PF0309510=PTPA=FE(11.7=100)
Main Inclusion Isoform:
ENSRNOT00000024914fB11578
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGACATTTTGTGGACGA
R:
GGCCCTGGTTCACTTTAGACC
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]