RnoEX0071161 @ rn6
Exon Skipping
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7708074-7709029:-
Coord C1 exon
chr14:7708892-7709029
Coord A exon
chr14:7708404-7708575
Coord C2 exon
chr14:7708074-7708159
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAAATGTATCATTAGAGG
3' ss Score
4.07
5' ss Seq
AACGTATTT
5' ss Score
2.02
Exon sequences
Seq C1 exon
AATCTGACTCCCGGGATGATGATGTCTATGACGATCCTCAAGAGGCTGAAGTCATCCAGTCCCTGCTGGATGTCGTGGATGAGGAAGCCCAGAACCTCCTAAACCAGACGAAGGCCTCCAGAAGAGCCTGTTCTCCAG
Seq A exon
AGGGTGTGGATGTTCAATGCCCAGAACCATATACACCATGCATCGTGATACCCACCTATAATCCCAGCATTTGAGATGTGGAGCCAGGACTGTGAGAAGCTCACTGTCATCTTCCGCTACATAGCAAGTTCAAGGCCAGCCTAGATTACATGAGACTCTGCAAAAGCAAAAC
Seq C2 exon
ATCCACTGAGGACAAATGGGGAGGCATCAGAAGACGGAGAAGATACTGACTGTGATGGGTCTCCGTTACCTGAGGATGTCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061-'57-61,'57-60,58-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.208 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000061162fB11589
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACTCCCGGGATGATGAT
R:
AGGGACATCCTCAGGTAACGG
Band lengths:
219-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]