RnoEX0071870 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161824926-161834239:-
Coord C1 exon
chr4:161834176-161834239
Coord A exon
chr4:161827466-161827608
Coord C2 exon
chr4:161824926-161825075
Length
143 bp
Sequences
Splice sites
3' ss Seq
GAATCTTCTTTATTCTCCAGTGA
3' ss Score
6.68
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ATCAAAGCAAGGGGAAGCATCTTTAACTCAGGAAGCCACGTGTTACCGCTTGAACAAGGAAAAG
Seq A exon
TGAAAGGAGTAGTTTCCTTCCCAATTCGAGTGGAGCCAGGCATGGCTCCTGTGGCTAAGCTGATTGTCTACACTATTTTACCTAATGAAGAACTTATTGCTGATGTTCAGAAATTCGACATTGAAAAGTGTTTTGCCAATACG
Seq C2 exon
GTGAATTTGAGTTTCCCATCAGCACAGAGCCTGCCAGCCTCTGACACCCACCTGACGGTCAAAGCCACACCTCTGTCCCTGTGTGCCCTCACTGCGGTCGACCAGAGTGTGCTGCTACTGAAGCCCGAAGCCAAGCTCTCTCCTCAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'15-17,'15-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(14.1=100)
A:
PF077039=A2M_N_2=FE(31.5=100)
C2:
PF077039=A2M_N_2=PD(26.2=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGCAAGGGGAAGCATCT
R:
TGATTGAGGAGAGAGCTTGGCT
Band lengths:
213-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]