RnoEX0071885 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161839233-161845601:-
Coord C1 exon
chr4:161845517-161845601
Coord A exon
chr4:161842144-161842267
Coord C2 exon
chr4:161839233-161839347
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGATCATGTTATTGTTCTAGATA
3' ss Score
8.7
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTTTACCCAAATTTGAGGTGCAAGTAAAAATGCCCAAGACGATGGCTTTCCTGGAAGAGGAACTTGTTGTAACTGCTTGTGGCTT
Seq A exon
ATACACATACGGAAAGCCTGTTCCTGGTCTGGTGACAATGAAAGTATGCAGAAAATATACACAGTCCTACTCCAACTGCCATGGCCAACACTCGAAAAGTATCTGTGAAGAATTCAGCAAACAG
Seq C2 exon
GCAGATGAAAAAGGATGTTTCAGACAAGTTGTAAAAACCAAAGTGTTCCAGCCCAGACAGAAAGGCTATGACATGAAGATAGAGGTGGAAGCCAAGATCAAAGAGGACGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'8-9,'8-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000009467fB11716
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAATTTGAGGTGCAAGT
R:
TGTTCCGTCCTCTTTGATCTTGG
Band lengths:
195-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]