RnoEX0071964 @ rn6
Exon Skipping
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3681245-3691972:-
Coord C1 exon
chr3:3691611-3691972
Coord A exon
chr3:3688825-3688905
Coord C2 exon
chr3:3681245-3681345
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCTCTCCTCTTCAGTCC
3' ss Score
9.99
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
CGTGATGGCGGTTGCTAGGGTGAAAGGTCAACGCGCCGGCGGCACTCCCAACATGGCTGCCGCCCGGGCTGTGGCGCGCGGTCCCGGAGCTGATGCGCGGCGGCCACTCTCTCCTCAGGCGGCGCGGGGGCCGCGGCTGCTCCTGCTGCTGGCGGTGGTGGCGGCAGTGGGGCCCCAGGAGGGCGGCGGGGCGCGGCTGTACCGCGTGGGCGAGGACGCCGTGTGGTTGCTGGACAGCGGCAGCGTGCGTTCGGCCACGGGCAACAGCTCAGCCGCGTGGCTGGTGCAGTTCCATTCGTCGTGGTGCGGCCACTGCATCGGCTACGCACCCACCTGGCGAGCGCTGGCGGCGGACGTGCGAG
Seq A exon
TCCTCCGTGGAGAGAAGACACATCTGTGGTTGCCCCGAAGTTCTTGGTGAAGGACTTGAAAGTGAACAGGAGACCTGGCAG
Seq C2 exon
ACTGGGCTGCTGCCATCCGTGTCGCTGCTCTGGACTGTGCAGAAGAAAAGAACCAGGACGTGTGCCGCACATATGACATCCACTTCTACCCCACCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=PU(42.7=39.2)
A:
PF0008515=Thioredoxin=PD(7.7=23.5)
C2:
PF0008515=Thioredoxin=FE(30.0=100)
Main Inclusion Isoform:
ENSRNOT00000061735fB11730
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGGTGCAGTTCCATTC
R:
TGGATGTCATATGTGCGGCAC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]