RnoEX0072375 @ rn6
Exon Skipping
Gene
ENSRNOG00000026523 | RGD1309106
Description
similar to hypothetical protein [Source:RGD Symbol;Acc:1309106]
Coordinates
chr13:79883043-79885697:-
Coord C1 exon
chr13:79885612-79885697
Coord A exon
chr13:79884556-79884605
Coord C2 exon
chr13:79883043-79883127
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTAAATTCGGCTTAGGTC
3' ss Score
7.1
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ACTTTTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCGTGGTAAACAAGCCGTTAATACTCAGCATCCCTAGAAG
Seq A exon
GTCATAAGCTCACATGCTGGTGGCAGTCAGATGGAAGTCACACTGATAAG
Seq C2 exon
GTACCGCTCCTCCATTGTTCTGACTTCATACAAGAAGGATATGTATTTGCCACACTTGCTTGAAGATTCAGACTTCATATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026523-'13-8,'13-7,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150811=DUF4548=PU(11.5=65.5)
A:
PF150811=DUF4548=PD(4.8=33.3)
C2:
PF150811=DUF4548=FE(17.0=100)
Main Inclusion Isoform:
ENSRNOT00000035815fB11819
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATTCCTTGGCTTAGTGAGG
R:
TCTTCAAGCAAGTGTGGCAAA
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]