RnoEX0072600 @ rn6
Exon Skipping
Gene
ENSRNOG00000042232 | RGD1559600
Description
RGD1559600 [Source:RGD Symbol;Acc:1559600]
Coordinates
chr1:189347736-189359730:-
Coord C1 exon
chr1:189359681-189359730
Coord A exon
chr1:189359244-189359574
Coord C2 exon
chr1:189347736-189348268
Length
331 bp
Sequences
Splice sites
3' ss Seq
TCTATAAAATCATCTTTCAGCTG
3' ss Score
7.32
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TAGAGAAAAGGACCATGAAGAACCTTCCCCATTCTCATGGGCTACTCAAG
Seq A exon
CTGAAGAGCCACACAGCTTCATAGCTACGATCCACGCTCCAGAGACACAGAGATCTCAACATGAGCCTCAGCTTTACCTGCAACAGTTGTCTCTTCCTGGGTGAATGAGACACTGAGATCTCAGCACAAGCCCCAGCTTTGGCCACAAAACCCATCCCTTCCCGTGTGAGGCCTGGCTCCATTCCTCACTTTATTTGTAAAACGAAAATGTCAAAGTCTAAGGATTTTGTTTGTTAGTGTTCGACTAGAGGACTCTTGAGAGGCTCCTAACATGCAATGATAGAGTGTGTTGGCTCTTTAACTCTAGCTAACAGAAACGATTCTGCAGAAG
Seq C2 exon
ATGCAGGTTGACAGTGGACTCAACTCTGGGATGTATGCATCAGAGATGGGCTCAGAGACTTGGACTCTGTCTTCGATCCTGAAGCAGCCCTGCAGATTGATCACAGGCCCTCTCAGCCTCAGATCGCATTGGTACTGTTGGAACCATGTAGTTTCAGCAGCAGTCCTGCTGAGATGTGAGGATGTTACAGTCATCAGCAGGTCAAGTGAAAGATCTGCTTCGTACCTTGGAGCAAACTCCAATCTCCTTGCTTTAGGTCTTGGAGACCATCTAGTTCAACCATGGACCACCATCCATGAAGGACACACCCACCCTGCATTCTCCACACAGAAAGACACAGAGGAGGCTCCCTCCTGGGACCTCAGATTAGGCATAAACCACACCCAAACACCTGTTTTTACTGAGAGATTCTTTCTTAAGGAGGGCAGAAAAGTTAAAGTGGCTGATTTTAGAACCTAGAGTCTGCTGGACGCCTCATCAGGCCCACTAAACAGAGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042232-'1-1,'1-0,2-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000066597fB11874
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCATGAAGAACCTTCCCC
R:
GGTGGGTGTGTCCTTCATGGA
Band lengths:
354-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]