RnoEX0072891 @ rn6
Exon Skipping
Gene
ENSRNOG00000042369 | RGD1564614
Description
similar to complement factor H-related protein [Source:RGD Symbol;Acc:1564614]
Coordinates
chr13:56927930-56941515:-
Coord C1 exon
chr13:56941339-56941515
Coord A exon
chr13:56929252-56929434
Coord C2 exon
chr13:56927930-56928106
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTACATGTTTCCCTATTTAGAGA
3' ss Score
8.96
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
AGGAATGTGTTTTGCATTATGTGGAAAATGGTTATTCTTTATTCTTGGAAAGAAAATTTGTACAAGATCAGTCTGTCAAAGTCAACTGTTATAAAGGCTTCAACCTTCCAAATGGTCAGGATACAATTACATGTACAGAGAGTGGCTGGACACCTCAACCCATATGCATCCCTTCTG
Seq A exon
AGACATGCTCAAAGTCAGATATAGAAATTGATAATGGATTTTTTTCTGAATCTGATTTAACATATGCTGTAAATAGAAAAACACGATATGTGTGTAAACAGGGATATACAACAGCAAATGGAGAAAGATCGGGATCAATCACTTGCCTACAAACTGGATGGTCTGCTCAACCTTCTTGCATTA
Seq C2 exon
AGTCTTGTGATGTGCCTGTGTTTGAGAATGCTAAATCTAAAAATGATAGCACATGGTTTAAACTCAATGACAAATTAGATTATGAATGTCACATTGGATATGAAAATAAATATAAGCATACCAAAGGCTCCATAATGTGTACTACTGATGGATGGTCTGATAAACCCTCATGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042369-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(3.3=3.3),PF0008415=Sushi=WD(100=86.7),PF0008415=Sushi=PU(3.2=3.3)
A:
PF0008415=Sushi=PD(95.2=95.2)
C2:
PF0008415=Sushi=WD(100=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTCAACCTTCCAAATGGT
R:
TGAGGGTTTATCAGACCATCCA
Band lengths:
253-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]