RnoEX0072897 @ rn6
Exon Skipping
Gene
ENSRNOG00000042369 | RGD1564614
Description
similar to complement factor H-related protein [Source:RGD Symbol;Acc:1564614]
Coordinates
chr13:56941339-56958549:-
Coord C1 exon
chr13:56958428-56958549
Coord A exon
chr13:56941922-56942116
Coord C2 exon
chr13:56941339-56941515
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTGTTTGCTGCAAGTTA
3' ss Score
3.95
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATCAGTTTCCCAGAAGCTCCACCACACCTGGAGTCTTAGTCTTTAGAAGATGAGGTTCTATAGCATATGGCTCTTAGCAAATATTCTCCTAATCACATCACTTTCTACTGCTAAAGGGGAAG
Seq A exon
TTAAAAAATGTAATTTTTCACAAATCAAAAATGGACATCTATATAAAGGAGATATATATAGATTCTACTTGGCAATCTCTACAGAAAAAGAGTTCCGCTATTACTGCAACAGTGGATTTGTGACTCCTTCAGGGTCACATTCAGACTACCTGCGTTGCACAATACAAGGCTGGGAACCTGCAGTCCCATGCCTCA
Seq C2 exon
AGGAATGTGTTTTGCATTATGTGGAAAATGGTTATTCTTTATTCTTGGAAAGAAAATTTGTACAAGATCAGTCTGTCAAAGTCAACTGTTATAAAGGCTTCAACCTTCCAAATGGTCAGGATACAATTACATGTACAGAGAGTGGCTGGACACCTCAACCCATATGCATCCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042369_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(95.1=87.9)
C2:
PF0008415=Sushi=PD(3.3=3.3),PF0008415=Sushi=WD(100=86.7),PF0008415=Sushi=PU(3.2=3.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCACACCTGGAGTCTT
R:
TGTCCAGCCACTCTCTGTACA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]