RnoEX0073001 @ rn6
Exon Skipping
Gene
ENSRNOG00000028651 | RGD1566386
Description
similar to Hypothetical protein A430033K04 [Source:RGD Symbol;Acc:1566386]
Coordinates
chr12:18119626-18139444:-
Coord C1 exon
chr12:18139318-18139444
Coord A exon
chr12:18138309-18138398
Coord C2 exon
chr12:18119626-18119752
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCCCCACTCTAGGCC
3' ss Score
11.29
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCCTTTGTCTGGGACCCTCCATATTGGAATCCAAGTCCGGTGCTAGGGAAGCTGTTGCGTAGCTTCGGTGGCGCAGTAACGCTGTGGGTGCTGGGCGATGGTAAGAAGTCCCCGAGAAGTGGACATG
Seq A exon
GCCAGGACAGCTTATGAGAATACCTTTGTCTACTTTCCCCATGGGAACTGTGAGATGTCCTCATCCCGACCCCCATGTCTTTACCAGGTG
Seq C2 exon
GGATTGGTGTCATTTGAGGACGTAGCCGTAGACTTCACTTGGCAGGAATGGCAGGAGCTGGATGCTGTTCAGAGGACCCTCTACAGGGACGTGATGCTGGAGAACTACAGGAGCCTGGTGTGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028651_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSRNOT00000028927fB11954
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCCAAGTCCGGTGCTA
R:
GTCCTCTGAACAGCATCCAGC
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]