RnoEX0073035 @ rn6
Exon Skipping
Gene
ENSRNOG00000032708 | RT1-Bb
Description
RT1 class II, locus Bb [Source:RGD Symbol;Acc:3469]
Coordinates
chr20:4039413-4045498:+
Coord C1 exon
chr20:4039413-4039569
Coord A exon
chr20:4043792-4043887
Coord C2 exon
chr20:4045232-4045498
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCCATTACCTGTTCCTTAGAGA
3' ss Score
6.58
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCCCTAGTGCACTTCTGTGCTTCTCCCAGGCCTTCTTGGTGACTTAGTCTGCCGGAGACTGGTGATGTTGCCTCATACTCCCTCCTCATTGGCTGGATCAGAAACCAGCATCTGTAAAGCCTCTTTGTCATCGGATGTCTCTAGTTCAGCTTTCGTG
Seq A exon
AGATGGCTCTGCAGACCCCCAGCTTCCTCCTCCCGGCAGCTGTGGTTGTGCTGATGGTGCTGAGCAGCCCAGGGACTGAGGGCAGAGACTCCCCAA
Seq C2 exon
GGGATTTCGTATTCCAGTTCAAGGGCCTGTGCTACTACACCAACGGGACGCAGCGCATACGGCTCGTGATCAGATACATCTACAACCGGGAGGAGTACGTGCGCTTCGACAGCGACGTGGGCGAGTTCCGCGCGCTGACCGAGCTGGGGCGGCCCTCAGCCGAGTACTATAACAAACAGTACCTGGAGCGGACGCGGGCCGAGCTGGACACGGTCTGCAGACACAACTACGAGGAGACGGAGGTCCCCACCTCCCTGCGGCGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032708_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0096914=MHC_II_beta=WD(100=81.1)
Main Inclusion Isoform:
ENSRNOT00000082136fB11961
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCCTCCTCATTGGCTGG
R:
ACGTACTCCTCCCGGTTGTAG
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]