RnoEX0073055 @ rn6
Exon Skipping
Gene
ENSRNOG00000000763 | RT1-M3-1
Description
RT1 class Ib, locus M3, gene 1 [Source:RGD Symbol;Acc:3494]
Coordinates
chr20:1817762-1818800:-
Coord C1 exon
chr20:1818707-1818800
Coord A exon
chr20:1818240-1818509
Coord C2 exon
chr20:1817762-1818037
Length
270 bp
Sequences
Splice sites
3' ss Seq
TAACCCTGCGCCACCTCCAGGCA
3' ss Score
6.69
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CATCCAATCAGGGCTACCACGGGAAGGATGGCGACCTCAAACAAGTTCTCTCTCCTGCTGATGGTGGTGGTCGCTCTGGCTGTTAGCCGAACAG
Seq A exon
GCACACATTCACTGCGTTATTTCCACACTGCCCTGTCACGGCCGGGCCGTGGGGAGCCTCAATATATTTCTGTCGGCTATGTGGATGACAAGCTGTTTCAGCGCTGTGATAGCGTTGAGGAGATTCCGAGGATGGAGGCCCGTGCACCTTGGATGGAGAAGGAAGGACCAGAGTATTGGGAGGAGCTGAAACTCAAAGTAAAAAGCATTGCACAAAGAGCCAGAGCAAGACTTCGGACCTTGATCCGCTACTACAACCAGAGTGAAGGCA
Seq C2 exon
GTTCTCACATCCTGCAGTGGATGGTTGCCTGCGAGGTGGGGCCAGACATGAGACTTCTTGGAGCACACTATCAGGCTGCATATGACGGCTCGGATTACATCACCCTGAATGAGGACCTGAGCTCCTGGACTGCAGCAGACATGGTGGCTCAGATCACGAAGAGCGAGTTAGAGTCAGAAGGTAGAGCAGAATACTTCAGAGCCTATGTGGATGGAGAGTGCCTGGAGCTGCTCCATAGATTCCTGCAGAATGGAAAAGAGATTCTTCAGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000763_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.011
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(50.3=98.9)
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGATGGCGACCTCAAAC
R:
GCACTCTCCATCCACATAGGC
Band lengths:
294-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]