RnoEX0073057 @ rn6
Exon Skipping
Gene
ENSRNOG00000000763 | RT1-M3-1
Description
RT1 class Ib, locus M3, gene 1 [Source:RGD Symbol;Acc:3494]
Coordinates
chr20:1780768-1818037:-
Coord C1 exon
chr20:1817762-1818037
Coord A exon
chr20:1816522-1816797
Coord C2 exon
chr20:1780768-1780936
Length
276 bp
Sequences
Splice sites
3' ss Seq
CCCAACACTTCCCCACCCAGATC
3' ss Score
6.84
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTTCTCACATCCTGCAGTGGATGGTTGCCTGCGAGGTGGGGCCAGACATGAGACTTCTTGGAGCACACTATCAGGCTGCATATGACGGCTCGGATTACATCACCCTGAATGAGGACCTGAGCTCCTGGACTGCAGCAGACATGGTGGCTCAGATCACGAAGAGCGAGTTAGAGTCAGAAGGTAGAGCAGAATACTTCAGAGCCTATGTGGATGGAGAGTGCCTGGAGCTGCTCCATAGATTCCTGCAGAATGGAAAAGAGATTCTTCAGAGAGCAG
Seq A exon
ATCCCCCAAAGGCACATGTGACCCTTCACCCAAGACCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTAACCTGGCAGTTGAATGGGGAGGACCTGACCCAGGACATGGAGCTTGTGGAGACCAAGCCTTCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAAATACACATGCCATGTGGAGCATGAGGGGCTGCCTGAGCCTCTTGTCCTGAAATGGG
Seq C2 exon
AGCTCTAGAGACAGTGACCACATGGTAACTGTTCTGAGTCTCCAGAGATCAGCTGACTACATAGCGCTTTCTATTCAGTGAAGCAAGGATCTTTGAAGACATCAGTGCTTGCAGTTCAGTTCAGAGAGAACTTATACAAAAAGAAGCCGAAGACATCTAGGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000763_MULTIEX1-3/5=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.194 C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.2=94.6)
A:
PF0765410=C1-set=WD(100=93.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTCAGATCACGAAGAGC
R:
TCTGCCTAGATGTCTTCGGCT
Band lengths:
298-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]