RnoEX0073769 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12303714-12306848:-
Coord C1 exon
chr3:12306722-12306848
Coord A exon
chr3:12304086-12304195
Coord C2 exon
chr3:12303714-12303814
Length
110 bp
Sequences
Splice sites
3' ss Seq
CATGGTTTCATGTATTCTAGGTT
3' ss Score
9.69
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
CTTTTAAATCGCAAAGACAAGACCACTTTCGAGAAACTGGACTACCTGATGTCAAAAGAAGACAACTACAAGCGAACTCGGGACTACATCCGAAGTCTGAAGATGGTGCCCAGCATTCCTTATCTAG
Seq A exon
GTTGGCCTTGAAGTCACTATGTGGTCAAGGATGGTCATGAACATGCTGCCTGCCTCCATCTTCTTACCTCCATCTCCCAAGGGTCATTTTTCCCTAGGAATGATTGTGAG
Seq C2 exon
TGTCGTCTTGGGGTTTCCTAGGCCATCAGCGGGTCTGCTCTGGCCTCTGGGACCTTTGCCACTTGGCATGTCTGGACAGAAGCAGCCCTCCTTGCCCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910-'21-17,'21-16,22-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(21.5=100)
A:
PF0061714=RasGEF=PD(0.6=25.0)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000022755fB12090
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAATCGCAAAGACAAGACCACT
R:
TCCAGGGCAAGGAGGGCT
Band lengths:
226-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]