RnoEX0073772 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12203233-12211732:-
Coord C1 exon
chr3:12211665-12211732
Coord A exon
chr3:12206391-12206506
Coord C2 exon
chr3:12203233-12203359
Length
116 bp
Sequences
Splice sites
3' ss Seq
TACTTTCCCCTCTGCCACAGCTG
3' ss Score
7.94
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GTTGTCACTCAGAATCGAACCAGGAAGCAGCTCTCCAAGACTAGTCTCTTCCAAGGAAGATCTTGCAG
Seq A exon
CTGCCTCCCATTACTTTCCGATGTGTGAGATTTGGAAAGGCCAGCTGGAATGGGACAGTGCTAGCCCAGAGCAGAGCCAGGCCAGAAATCCTTGAGAAGAGGTTCCTTTGCCCACG
Seq C2 exon
GCCCCTCTGCCGGCTCCAGCTCAGCCAGGTTCCGCCGGAGGCCCACCTGTCCAGATGCATCTGTGGCCGGCAGCCTCCCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGTCTGGGCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910-'26-25,'26-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.323 C2=0.884
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000022755fB12091
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCACTCAGAATCGAACCAGG
R:
TTGTTGCCCAGACTGTGGC
Band lengths:
194-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]