RnoEX0073789 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74490369-74491733:-
Coord C1 exon
chr13:74491644-74491733
Coord A exon
chr13:74491239-74491300
Coord C2 exon
chr13:74490369-74490461
Length
62 bp
Sequences
Splice sites
3' ss Seq
GATTTCTTTTTTCCCTCTAGGTC
3' ss Score
13
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
GTAAGCTTTTGGGTTGTAAGAGAGATTCTCCATGCTCAGACCCTGAAAATAAGAGCAGAAGTTTTGAGCCACTATATCAAAACCGCTAAG
Seq A exon
GTCTGCATGTTTAGGCATCCATCAAGTCTAACGTGGCACTTAGTCTCCAGTAAATGTTTACT
Seq C2 exon
AAACTATATGAACTCAACAACCTTCATGCTCTCATGGCTGTGGTTTCTGGCTTACAGAGTGCGCCAATTTTCAGGTTGACTAAGACGTGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736-'20-12,'20-11,21-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.0=100)
A:
PF0061714=RasGEF=PD(4.5=19.0)
C2:
PF0061714=RasGEF=FE(15.5=100)
Main Inclusion Isoform:
ENSRNOT00000077169fB12095
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGCTCAGACCCTGAA
R:
ACCTGAAAATTGGCGCACTCT
Band lengths:
140-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]