RnoEX0074031 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139253629-139254551:-
Coord C1 exon
chr7:139254546-139254551
Coord A exon
chr7:139254297-139254407
Coord C2 exon
chr7:139253629-139254120
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGCTACTTCTGTGGATCTAGTGT
3' ss Score
2.86
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGAAG
Seq A exon
TGTGTGTACAAAGGTGGACATGCCTTCAGGACATGGGCAGTGAGGTGGGGCCGAATTCCAGCCAGAACTGAGAAGGGCCTCATCTTTGTGAGTCAAGCTGGAGACCCCTAG
Seq C2 exon
GTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGCTGAAGAGAATGCACCGTCCCCGGTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCAAGCTGCATCCAGGGACTTCGCTGGGTGAGTACCGGCCATCTGCCAGGGTGGGTCAGGGCTGGAAGAGTCTGGACTGTAGTGCTGGCGGGTCAGGCAGCTTTCTCCAGGACAAATACATCTGGATGGATAGAAGGCAGGGAAGTTTGGTGGCAGAGTGTGTGTGGCTGCTCACACAATGAGCCTGTGTGCCCCGTGTGCACGTCGTGCTGCGTGCGCTGCCCCATTCAGCCACCGGTGGGCGAGCAAGAAAGGGCTTTATCATTTACCCATCACCTCCGTGTGCCAGGCGTGGACTTACATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000083182fB12149
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]