RnoEX0074033 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139241071-139243369:-
Coord C1 exon
chr7:139243330-139243369
Coord A exon
chr7:139242393-139242530
Coord C2 exon
chr7:139241071-139241152
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTCTTCCAATACTAGGCT
3' ss Score
8.02
5' ss Seq
AAAGTGGGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
GTTGGAGAATGGCTGTGGGAATGTATCTCCTCAGACCAAG
Seq A exon
GCTCCTCCCCACACGCCAGAACTTGTGATGTGTTGTATGTTCCCATCGGTCACGTCCCCCCAGGATGCAGGGCTGGACGTGAGAGACTTGCTTCTTCTGCATGTGGAGCAGAGCTGTGAAACAGAAGCACCTGAGAAA
Seq C2 exon
GCCCGGAATGCACCTGTTTGGTTTCCTAACCATGAGGAACCCCTCCCAAGCAGCGCTGGGGCCATCCGAGTCGGGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.109 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000083182fB12150
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGAATGGCTGTGGGAA
R:
CGACTCGGATGGCCCCAG
Band lengths:
113-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]