RnoEX0074034 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139248463-139254149:-
Coord C1 exon
chr7:139253908-139254149
Coord A exon
chr7:139253033-139253479
Coord C2 exon
chr7:139248463-139248516
Length
447 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTTTTTGGCTCCTAGGGT
3' ss Score
8.94
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCTGTCCACTTTCCTCCCCCCATCACAGGTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGCTGAAGAGAATGCACCGTCCCCGGTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCAAGCTGCATCCAGGGACTTCGCTGG
Seq A exon
GGTGAGGTATTTGTGTGAATAAAGCTTGGCACCTGGCCACCGGGGGACTGAAGAGGTTTCAGGGCGGAGAACGACTGCTGAAGGAAGCCAGTGAGAAGGACAGGGGCTAGGGAGGGGGAAAGGCAGGAACCTGGCTCCTGGAATCCTTTTCCCCAACTACCAGGCTCAACAGTCCTGTCTGTATGCTCCGCTCTCTCTCCCTCCCCCGCACCCCCCCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGGCAAAGAGTACTGAGTGGAGGGTGGGGAGAGAACAGGAATGGGTGACAATCTTGGAAAGGATCATCTTTCACCAGCAAGTCTTTTTGAGTAAAAACATATCAGCACTGATTGTTTCCTTTTCCTATCTTGTCCAGATACTATTTCCATTTCTAATAGAGGAGTCTGGGTTGAGAAAGCCCCAG
Seq C2 exon
ACGCCACTTACCAACAGTGAGGGCTCCCTGGACTTCAGAGTGAGCCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000083182fB12151
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCACTTTCCTCCCCC
R:
TGCTCCAGGCTCACTCTGAAG
Band lengths:
294-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]