RnoEX0074039 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58840277-58843358:+
Coord C1 exon
chr3:58840277-58840383
Coord A exon
chr3:58840578-58840677
Coord C2 exon
chr3:58843237-58843358
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTGTCTGTTCCCCAGTGT
3' ss Score
8.6
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCCCTTCAGAGAAGATCCTCAGAGCTGGAAAAATTTTGCGAATTGCCATTCTCTCTCGAGCACCCCACATGATAAGAGACAGAAAATACCACCTAAAGACATACAG
Seq A exon
TGTCTTCAGTGGACCTACAGAGTTCAGCTACCGTTCACATAGGCCTTGCCTATGCTCCTCTGATTCCTGTATGTGATCCATTACCCCCCCTGCTGGAGAG
Seq C2 exon
ACAATGCTGTGTTGGGACTGAGCTGGTAGACTGGATGATACAGCAGACGTCCTGTGTTCACTCCCGGACTCAAGCTGTTGGCATGTGGCAAGTCTTGCTGGAAGATGGCGTCCTCAACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'29-17,'29-16,30-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(20.0=38.9)
A:
NO
C2:
PF0061016=DEP=FE(58.6=100)
Main Inclusion Isoform:
ENSRNOT00000010630fB12152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTTCAGAGAAGATCCTCAGA
R:
GTGGTTGAGGACGCCATCTTC
Band lengths:
228-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]