RnoEX0074634 @ rn6
Exon Skipping
Gene
ENSRNOG00000005387 | Rbm3
Description
RNA binding motif protein 3 [Source:RGD Symbol;Acc:620145]
Coordinates
chrX:15101342-15103408:+
Coord C1 exon
chrX:15101342-15101425
Coord A exon
chrX:15101746-15101874
Coord C2 exon
chrX:15103308-15103408
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACCGTTCTTACTGTTCTCAGATA
3' ss Score
9.21
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
AAGCCAGGGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAATGTAG
Seq A exon
ATACACAAGGAATAACACTTCTGATCCAGGATCGTCCTTGCAAATTGCTGTATTTATAAAGATTTTTGGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTCCCAAG
Seq C2 exon
GTGGATGAAGACTCAGGAACTTCCCAGAATACTGCTTCACCCACTGAGCCAGGCCCAGGTTATGGGGCATTGTGGCTAACCCTACCAGGTGGGTACTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005387-'20-10,'20-9,21-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCTATGACCGCTACTCA
R:
ACCAAGTACCCACCTGGTA
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]