RnoEX0074744 @ rn6
Exon Skipping
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46894939-46942966:-
Coord C1 exon
chr3:46942893-46942966
Coord A exon
chr3:46942686-46942801
Coord C2 exon
chr3:46894939-46895114
Length
116 bp
Sequences
Splice sites
3' ss Seq
TAAATTCTTTCTCTTTGAAGATG
3' ss Score
7.92
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AGTTTGCTGTGCACTCTCAAAGTTGTCATTCACCTAATTGAATTTTACTCATGGAAAGGAGGTGGTTATTCCAG
Seq A exon
ATGCTGTAGCAGAGAGGAGGGTGCAATTAGCAGTTTTCCAGCCTTGCTTTCCCGAGCTGTTGTTCTTACCCCAGTTCACACATGGACAGATGATTATGCTACTTCTAGCTCCCCAG
Seq C2 exon
CAGTCTCTGGTCCCAGCGCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACCTGGTGAAGCTCTGTCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482-'4-5,'4-4,5-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.525
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=PU(29.9=33.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGCACTCTCAAAGTTGT
R:
GGTTGACAGAGCTTCACCAGG
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]