RnoEX0074768 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:124936100-124956190:-
Coord C1 exon
chr8:124956144-124956190
Coord A exon
chr8:124939843-124940002
Coord C2 exon
chr8:124936100-124936196
Length
160 bp
Sequences
Splice sites
3' ss Seq
CACTTTAATTGCTTTTTCAGAGG
3' ss Score
7.85
5' ss Seq
AGGGTGGAG
5' ss Score
-4.66
Exon sequences
Seq C1 exon
GCTGGCATGGCTCTGACCTATGACCCCACAGCTGCCCTACAGAATGG
Seq A exon
AGGTCTGTCTTCCAATACAGTTGTGCCAGAAGTCAAGAATTCAATGTATGAGCTGCGGAGGCGGGAGACACATTCAATCTATAGCAGAGACTGTTTTTTCCTTCTTGAGAAACTTTCAGCTGCTTCAGTTACAGAGCAAAGAAAAGCAATAAAGGAGAGG
Seq C2 exon
ATTTTACTCTTCACCGTACAGTCTCGCAACCAACCGCATGATCCCGCAGACATCTATCACGCCATTCATTGCCGCCTCCCCTGTCTCCACATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881-'33-26,'33-25,34-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.204 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000036672fB12275
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATGGCTCTGACCTATGA
R:
GGTATGTGGAGACAGGGGAGG
Band lengths:
140-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]