RnoEX0074836 @ rn6
Exon Skipping
Gene
ENSRNOG00000002750 | Rc3h1
Description
ring finger and CCCH-type domains 1 [Source:RGD Symbol;Acc:1563512]
Coordinates
chr13:78768849-78770977:+
Coord C1 exon
chr13:78768849-78768967
Coord A exon
chr13:78769075-78769220
Coord C2 exon
chr13:78770865-78770977
Length
146 bp
Sequences
Splice sites
3' ss Seq
AATGATACAAATATTTTCAGACT
3' ss Score
3.14
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ATGCTCCTCCTCCAACATGGGAACAGCTAGAAAATGGACTGGTTGCTGTACGTACAGTAGTCCATGGACTGGTTGATTATATCCAGAACCACAGCAAAAAAGGAGCAGATCAACAACAG
Seq A exon
ACTCTGACTATAGGGGTTGGAGAGAGGCTCCATGGTTAAGAGAACTGTCTGCTTTTTGAGAGAACTCAGTTCAAGTCCAAGCACCCACTTAAGTGATTCACAACCTCCTGCCAGTTCCAAGAATCAGATGCCCTGTTCTGGCCTCT
Seq C2 exon
CCTCCACAGCATAGCAAATACAAAACATACATGTGTCGAGATATGAAGCAAAGGGGAGGATGCCCTCGTGGGGCCAGCTGTACGTTTGCACATTCGCAGGAAGAACTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002750-'12-19,'12-18,13-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCCTCCTCCAACATGGG
R:
AGTTCTTCCTGCGAATGTGCA
Band lengths:
226-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]