RnoEX0074850 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21623041-21628654:-
Coord C1 exon
chr3:21628506-21628654
Coord A exon
chr3:21624816-21624876
Coord C2 exon
chr3:21623041-21623242
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTAATTCCAAAAAGGTT
3' ss Score
6.76
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAAATTCTGGACATACAACTTGGTATCAGTTCTCAAAATGATCAGTTGCTAAATGGAACTGCAGTGGAAAATGGTCATCCTGTCCAGCAGCACCAAAAGGACCCCGTAAAGCAGAAGAGACAGAGTTTAGGTGAAGACCATGTGATTCT
Seq A exon
GTTATGTAAACCAGTCTGTCTATTTCATGGATATTTAATAGTGAGATCTTCCATGTTGAAG
Seq C2 exon
TGAATGAAGAGTACCAATGGGATCACTTACTGTAACTCCGTCTACTGAATGGCCCCTTCTGCAAGCAGAACGCAGATGAACATGCTCAAGGAGTATCCCGTTTTCTAGAGATTAAGTTTGCTAGTAACTCCTTTACACTAGCTATTTCTTTGTATCCCTTTGCTGGCAAGGGAGTACAAGGAGTCAAACCACAGATCGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAAAAGGACCCCGTAAA
R:
ATCTGCGTTCTGCTTGCAGAA
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]