RnoEX0075368 @ rn6
Exon Skipping
Gene
ENSRNOG00000011321 | Rftn1
Description
raftlin lipid raft linker 1 [Source:RGD Symbol;Acc:1563347]
Coordinates
chr9:12888109-12899561:+
Coord C1 exon
chr9:12888109-12888824
Coord A exon
chr9:12889524-12890312
Coord C2 exon
chr9:12899446-12899561
Length
789 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTCTGTTTTCTAGGGA
3' ss Score
12.35
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTACCTCTTTTCTTGTTCCGGTGATCTTGGCTCTTCTTCCCAGCGTCCTCCATCAGAAAGCCGCATAGAGTCAGTAGACACAGGGTTTGATTTCTAACTAGCATATATCGGGCAGGTCTCCTGAAGGCTAGCCCCTCTGCCATGACCTGGTATGAATGAAGATGGTGAGTTTGGAGGCTTTTAAGAAGGCGGCTGCCTGGGACTGTTAATTCCGGAACCCTTTGGATGCCGCTCCAGAAGTGCAGATTGTTTGTTTTGCGTGCACCATTGCAGTCTGCAGCAGCAGCAGCACCCTGGCACTGGAAAGAATGGCAGCCCCCGCCTCTGGGAGCTGCTGCTGGGACATAAGTTCCGCACTCTGCCTTAGAAGTGGGCTCATCTCTAGGCCCTTGCTTTGAGAAATAGCACCACTAACATCAGCTTTGAGTCAGAAGGAAAGTCCGTCCGCAGTGGGGAGCGTTTTTGGAGTCAAGAAACAAATGGTTTGGGGTAACATGTCG
Seq A exon
GGAGGCAGACAAAGCTTCCTCCTCAGCAAACCTGTGACTGACTGTGTAACACCTTAAAGATGAACAGCTCTTAGTAGCTTCTCAGGAGGCTACTGGGTAATTGTCTCTCTCGTCTTAGCAAAATTGGAGCATCAAAAGAGATGTCTTTGGCTCCATTATCTGAGCCAAGAGAGAATACCATGTAAGCTCCCAAAGCCATTGATCCTGTCTTGACGATAGTGTGGAAGATCCAGGCGGAGTCAACCCCTGCACTCGTCTCACCTCCCCCTCCAGCCCTGCACACAAAGCACAGAGATCTGCTGGGGCTTTACAGCGGCCCCACAAGTGTAAAGTGTCGTTATAGCCTCCCCTGGCTTTAGGTACAGCAAACTACCGTTCCATCTATGAGGACGAATCGTGAAATGTCCCCTGCGACCGCAGCCCCTGTAGCGGTGACTCTCACACCTTTGCAGAGGAGGCTCTGCCTGCACAGGCCTGGGGCAGACCCCACTGGAGCAGACCTCAGAACGTGGTGTTTTCACTGTGTCTTTCTGCTGCGAGGAGAGGGAGTCACGGCAACCTTAGTGGCAAGGGTGGTTCTGCTCCGAGCAAGCTGAGGCTTTCCGGTGGCCAGGGAAGAAAGCAGGCACCTGACCTTTTCCCGGAGTTGAAGAGACAAGCGGAGCCTCGTTGCCAATAACCTGGCAGGGGAGAGTCAGTCTGTCTGTCGTGGCCTTTAAATGGGCATTCATTCCTCTTCAGAAGTATTTTCCACAGAGCTATGATATTACTGAAAACTTTGTCCTTCAG
Seq C2 exon
ATTCCTTCTATGGCCTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCACACAGGGCTATGACGCCATTGTTGTGGAACAATGGACAGTCCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011321-'14-10,'14-9,15-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.923 C2=0.000
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(14.0=100)
A:
PF152501=Raftlin=PD(1.4=35.7)
C2:
PF152501=Raftlin=FE(7.8=100)
Main Inclusion Isoform:
ENSRNOT00000015210fB12375
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTGTTTTGCGTGCACCA
R:
TGTTCCACAACAATGGCGTCA
Band lengths:
354-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]