RnoEX0076569 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48636568-48660188:+
Coord C1 exon
chr5:48636568-48636636
Coord A exon
chr5:48647517-48647551
Coord C2 exon
chr5:48660088-48660188
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCATGTGCCACCTAGGTA
3' ss Score
6.86
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTCTGGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTTCAGCCGATTGGA
Seq A exon
GTATGTTTCTTTCCCTGGAGACGCTTCGCTGACAG
Seq C2 exon
AAATACAAACCTGGTCGATGTGATGACATTTTGAAATGGAAACCTCCCAGCCTAAATTCTGTGGACTTTCGACTTAAGATAACAAGAATGGGAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'20-24,'20-23,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(11.8=100),PF0391910=mRNA_cap_C=FE(23.4=100)
A:
PF0133114=mRNA_cap_enzyme=PD(3.8=58.3)
C2:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
Main Inclusion Isoform:
ENSRNOT00000010614fB12592
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAAGAAGTCAGCCATGA
R:
CCACAGAATTTAGGCTGGGAGG
Band lengths:
116-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]