RnoEX0076803 @ rn6
Exon Skipping
Gene
ENSRNOG00000053405 | Rpap3
Description
RNA polymerase II associated protein 3 [Source:RGD Symbol;Acc:1303036]
Coordinates
chr7:139186002-139188397:-
Coord C1 exon
chr7:139188270-139188397
Coord A exon
chr7:139186833-139186909
Coord C2 exon
chr7:139186002-139186123
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTCTTTTCTTATAGACT
3' ss Score
10.35
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGCAACAAGTACTTCAAGCAAGGGAAATATGACGAAGCCATTGAATGCTACACGAAAGGCATGGATGCCGATCCCTACAACCCTGTGTTGCCAACAAACAGAGCATCTGCCTACTTTAGACTGAAAAA
Seq A exon
ACTCTTGAAATCCCACAAAACAGAAATTGCCTGACGTGGTGGCACACACCTTTAATCCCAGCACTCAGGAGGCAGAG
Seq C2 exon
ATTTGCTGTTGCTGAGTCTGACTGTAATTTGGCAATTGCCTTAAGCAGGAGTTATACCAAGGCTTATGCCAGACGAGGTGCTGCTCGATTTGCTCTGCAGAAGTTAGAGGACGCTAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053405_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0421213=MIT=PD(61.1=51.2),PF134141=TPR_11=FE(71.2=100)
A:
PF134141=TPR_11=PD(11.9=58.3)
C2:
PF134141=TPR_11=PD(23.5=38.1),PF0051523=TPR_1=PU(64.7=52.4)
Main Inclusion Isoform:
ENSRNOT00000083926fB12628
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTACACGAAAGGCATGGA
R:
CAGCACCTCGTCTGGCATAAG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]