RnoEX0078174 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175230086-175252687:-
Coord C1 exon
chr1:175252582-175252687
Coord A exon
chr1:175246617-175246687
Coord C2 exon
chr1:175230086-175230218
Length
71 bp
Sequences
Splice sites
3' ss Seq
AAATATTAAAAAAAAAACAGGGT
3' ss Score
-0.6
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAGCTGTTTTCCTTGGGTGCAGGAGACAGACAACTGATTCAGACTCCTTTGCATGACAGCCTCCCTGTTACAGGCACCAGTGTGGCTCTTTTATTTCAGCAATTAG
Seq A exon
GGTCCAGAATTAAGAAGGAGGAGGAAGAAGAGGAGGAAGAGGACAAGAGATTGGTGTCAGAATGATACCAG
Seq C2 exon
GCATTCAAAACGTCCTCAACCTCTTTTGTGCAGTCCTTACAGAAAATAAGGTTCTCTTCCATTCAGCAAGTTTCCAGAGACTTAGTGATGCCTGTAGAGCCCTGGAATCTTTAATGTTTCCTCTTAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.714 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.1=100)
A:
PF0214116=DENN=PD(3.2=13.6)
C2:
PF0214116=DENN=FE(24.0=100)
Main Inclusion Isoform:
ENSRNOT00000013126fB12911
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTTGCATGACAGCCTCC
R:
AGATTCCAGGGCTCTACAGGC
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]