RnoEX0078175 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175284087-175364137:-
Coord C1 exon
chr1:175364052-175364137
Coord A exon
chr1:175296825-175296942
Coord C2 exon
chr1:175284087-175284224
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCATTGTCTTTTAGTGA
3' ss Score
8.37
5' ss Seq
TCAGTGAGC
5' ss Score
4.04
Exon sequences
Seq C1 exon
GGCCAGGAGAAGGTCTGGGGAAAATAATTCAGAGATTCCCACAGCAGGACTGGGATGACACACCCTTTCCACAGGGAATTGAATTG
Seq A exon
TGACTACCCTGATCCCAGCTGTCCAAATATTCTCTCACATTCCTGTCAGAGTGTGACTGGAGCCGAGTTTTAAAAATTGTAATGTCGACTCTCATCTACTGGATCATCAGCATTCTCA
Seq C2 exon
TTTTGTCAACCTGGTGGATGGCACCTGTCCAGAGAACGGAAACAGCCAACATTCTTTGTGGTAGTCCTAACAGATATTGACTCGGATCGACATTACTGCTCATGCCTAACCTTCTATGAGGCAGAGATCAATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(36.5=79.3)
A:
NA
C2:
PF0345613=uDENN=PD(60.3=82.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGAAGGTCTGGGGAAA
R:
AGATTGATCTCTGCCTCATAGAAGGT
Band lengths:
218-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]