RnoEX0078177 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175255998-175284224:-
Coord C1 exon
chr1:175284087-175284224
Coord A exon
chr1:175278240-175278345
Coord C2 exon
chr1:175255998-175256117
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTATGAGACAGAGT
3' ss Score
2.07
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTTGTCAACCTGGTGGATGGCACCTGTCCAGAGAACGGAAACAGCCAACATTCTTTGTGGTAGTCCTAACAGATATTGACTCGGATCGACATTACTGCTCATGCCTAACCTTCTATGAGGCAGAGATCAATCTCCAG
Seq A exon
AGTCTCATGGTGCTGCCGTGGCTGGTCTGAAACTTGCTATGTAGACCAGGCTGGCCTCAGAGTCACAGAGATTATCTGTTGTGGTTCTCCAACTCTGGTATTGAAG
Seq C2 exon
GGAACGAAGAAGGAAGAGATCGAGGGTGAAGAAGTATCTGCTTTAATTCAACCTGCAGAAGTATTTGCACCCAAAAGCCTGGTGTTGGTATCCAGATTAGACTATCCAGAAATCTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(60.3=82.6)
A:
NO
C2:
PF0214116=DENN=PU(18.9=45.0)
Main Inclusion Isoform:
ENSRNOT00000077125fB12913
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCAACCTGGTGGATGGC
R:
ATAGTCTAATCTGGATACCAACACCA
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]