RnoEX0078184 @ rn6
Exon Skipping
Gene
ENSRNOG00000038625 | Sbk2
Description
SH3 domain binding kinase family, member 2 [Source:RGD Symbol;Acc:1563279]
Coordinates
chr1:72425707-72427212:+
Coord C1 exon
chr1:72425707-72425926
Coord A exon
chr1:72426544-72426582
Coord C2 exon
chr1:72426958-72427212
Length
39 bp
Sequences
Splice sites
3' ss Seq
GACTGTTTTCCACTCCTCAGGGT
3' ss Score
8.25
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
AACAGCAGTAGGCAGAAAGGGGTCAGACAAGCCTTGGAGAAGGCAAGGTCTGGAGCTCTGAGCCCAGGTCAGAAGTAGGGCAAGGTTAACCGGCCTGAGGGAAGGCTGCAGTTGAACAGGAAAACAGGTGGCAAGAGTCCTGGCCCCTCGACAGGACAAGAGACACCTTGAAGCAATCGAGTGCTTTAGTGTTGGTGACAGAAATCAAGGCCCAATTTGT
Seq A exon
GGTCTCTGAATGAATGGAGATGAGTCACAAAGAGAAGTG
Seq C2 exon
AAATGCCTGGCAAACAGTCAGAAGACAGGCCAATGGAAGTGGCAGCTGTGGAGGATGGAGGTGATGAAGGCTTGGGAGGCCTCACGGTAGAGGAGCTGCAGCAGGGTCAGGAGGCTGCTCTGGCCTTGGAAGACATGATGGCTCTGAGTGCCCAGACCCTGGTCCGAACAGAGGTGGAAGAGTTGTACGAGGAAGTGCGCCCCCTGGGCCAGGGCCGGTTCGGTCGTGTCCTGCTGGTTACTCACCGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038625-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.306
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(8.6=27.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGACAGGACAAGAGACA
R:
CCACTTCCATTGGCCTGTCTT
Band lengths:
118-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]