RnoEX0078271 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44046000-44056617:+
Coord C1 exon
chr1:44046000-44046044
Coord A exon
chr1:44050981-44051189
Coord C2 exon
chr1:44056456-44056617
Length
209 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTAATTATTTACAGAAT
3' ss Score
8.34
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TTCTATAAACATGTGGTACAGAGCGTTGAGAAATTCATTCAGAAA
Seq A exon
AATATTAGTTTCTATAACCCAACCCACAAGGATAATACTTCCAAAATTAACAGCACAGCTAAAGTTGCCCAAAATTCAAATTTTACACCACTAAACTTCGGCAGTTCATAGACCAGCTTTTCAGATATACAGAAGAAGAATTCCCCACATGGTGCCGCCCTAACTGTACCCTGGGATAGCCACCAGCAGCATCACTCAGTTATGTGCAG
Seq C2 exon
TGTAAACCAGAATACAAGGTACCCGGACTGTATGTTATTGACTCCATTGTGCGACAATCCCGGCATCAGTTTGGTCAAGAAAAGGATGTGTTTGCACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATATCGGTGCCCGGGGGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Inclusion Isoform:
ENSRNOT00000083425fB12927
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATAAACATGTGGTACAGAGCGT
R:
CTTGTCATCCCCCGGGCA
Band lengths:
206-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]