RnoEX0078299 @ rn6
Exon Skipping
Gene
ENSRNOG00000019136 | Scamp2
Description
secretory carrier membrane protein 2 [Source:RGD Symbol;Acc:68348]
Coordinates
chr8:62360678-62362137:+
Coord C1 exon
chr8:62360678-62360837
Coord A exon
chr8:62361005-62361179
Coord C2 exon
chr8:62362036-62362137
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTAAGATCTGTTTCCCTTAGCCA
3' ss Score
4.59
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
TGCATTCAGTGACTCTGTTTCTAAACCTGCTTGCATGCCTGGCCTGGTTCACAAGTGACGCAGCTAATGGAACAGCCTTTGGCCTCTCCATCCTTTGGTTTCTGATTTTCACGCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTCAG
Seq A exon
CCAGGCCTGTGGGTGAAGTTTGCTAGAGGCCCGTCCATGGATGAACATGGGAATGAGAGAGGACGGGAGCCTTGCCTGCTGCTGCACTATTCCTGGCCAGGCTAGCTGGCAGGCAGGGATTCAGTTGCTGTGAAGAGGGAGTACCCTGCTGAGGCTGGAGGTATTGCCCTGTCAG
Seq C2 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGAATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019136_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.6=100)
A:
PF041448=SCAMP=PD(3.0=50.0)
C2:
PF041448=SCAMP=FE(19.0=100)
Main Inclusion Isoform:
ENSRNOT00000066923fB12934
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAAACCTGCTTGCATGCCT
R:
CTGGTCCCCAAGTTAGGCAAG
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]