RnoEX0078307 @ rn6
Exon Skipping
Gene
ENSRNOG00000018271 | Scamp4
Description
secretory carrier membrane protein 4 [Source:RGD Symbol;Acc:68354]
Coordinates
chr7:11975571-11982141:-
Coord C1 exon
chr7:11982110-11982141
Coord A exon
chr7:11976198-11976245
Coord C2 exon
chr7:11975571-11975699
Length
48 bp
Sequences
Splice sites
3' ss Seq
TAATACAAGTCTTCTTTCAGGTG
3' ss Score
4.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATAAGCGTGGCGTTCGCGCGGGTGTCCCTCAG
Seq A exon
GTGGCCCCTTCTGCCTGGGTGCCAGGTCAGCTGACACAGAAATGGCAG
Seq C2 exon
GAAAGGAGAACAACTTCCCCCCGCTGCCTCACTTCCTGCCGCTGAAGCCCTGCTTCTACCAGGACTTCTCTGATGAGATCCCGGTGGAGCACCAGGTGCTGGTGAAGAGGATCTACCGGCTGTGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018271_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF041448=SCAMP=PU(23.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]