RnoEX0078598 @ rn6
Exon Skipping
Gene
ENSRNOG00000029342 | Scn7a
Description
sodium voltage-gated channel alpha subunit 7 [Source:RGD Symbol;Acc:61922]
Coordinates
chr3:52812052-52830146:-
Coord C1 exon
chr3:52829940-52830146
Coord A exon
chr3:52815957-52816021
Coord C2 exon
chr3:52812052-52812148
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCCACTTTCTCTTCTATTAGCTT
3' ss Score
7.51
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCTTTATGCTTCAGGAAAGATCTACATGATATTTTTTGTTCTGATCAGTTTCTGGTTTGCCTTCTATATGGCAAGTTTGTTCTTGGGCATCCTCACTATGGCCTATGAACAGGAGAAGCAGAGAGCTTCTGAGGAGTCTAGAGACATGGATTCTAAATGTCATCAGACTGTGAAAGAATTCGAGGAAGAACATGAAGGAGCTGAG
Seq A exon
CTTCAGTGTATCTGGTTTTATGAGGAGGTTCTTGATCTACTTGGACTTGAGCTTTGTACAAGGAG
Seq C2 exon
ATGGAAACTACACAAATAGAAATGAAGAAAAGATCACCAACCTCTATAAACACCACATTGGATATACTGGAAGACACTGCCCTTGGACACAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029342_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(12.5=44.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTTCTGAGGAGTCTAGAGAC
R:
TTTGTGTCCAAGGGCAGTGTC
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]