RnoEX0078701 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60042120-60048746:+
Coord C1 exon
chr3:60042120-60042294
Coord A exon
chr3:60044381-60044533
Coord C2 exon
chr3:60046818-60048746
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGATCCTCCTGCCCTGACAGCTG
3' ss Score
7.62
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTGTTTTTAAGCCTTTCATATTTGTACCACATGTTTCGCCACTGTTGGATACAAAATCACCAACATTTGAACTTGAGAGGCCCGTGGCAAAGAAGCCATATGTCAAGCCCGACAGAAGACACCTACTCTACCAAAACCATCAACAGGCCTTGGAAATGATAAGTAACCATAAG
Seq A exon
CTGAAACTCGAGGCCTTCTGGTCCTGGTTCTGTTCTCCTTGGCAATACTTGCAGGAGCCCCAGTCTGGTGCCCTGGGCCACCTCCACACACCTCACTGCTCATGACAACATTCAAGTGCTCATAGCCTTTGCCCTAGAGACTGCTCCAAGGAG
Seq C2 exon
GAAAAAGGCAAGACAATATTGGACAACGTGAGGAAGCTGGAAAAAGAAGTGTTTGAAGAGATAGAATCAATCCTCCAAAACAGACATCTTGACATGGATAAAACTGTTAATCTCTTTCCTCAATATGTAAGAGATGAAATTAAAATTTATCAGCCAAATATTAGTTCTTAATGATCATTTAAGTGGCCAGAAACCTTCCTCACTGCCCTGGATATGATACTTCTTTAAGGAGACCTGACTGTTCCCTCAGTATCCTGTGGTATTCTGGCTGCTAAGACCACAGTATTAGCTTCGGTTGGATAAAGCCTGAAACATAAGCATGACGCATGTCTGTGCTATCATTATGTATTATAAAGAAAGCTCAGGGTTTTTCCTAAGCAATGGACAGTATGTCAAGTGCATTTTTTGTGCTTTAGGCAAATATTGACCAGCTTCAACAGATGTCCAGATTTACGCTGTTTGACACTGCCACACATTCTGCAGAAGCCCTTTCATTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.059 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000081881fB13012
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAACCATCAACAGGCCT
R:
TATCCAGGGCAGTGAGGAAGG
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]