RnoEX0078702 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60028717-60029842:+
Coord C1 exon
chr3:60028717-60028898
Coord A exon
chr3:60029007-60029162
Coord C2 exon
chr3:60029646-60029842
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTCAAATGTCACTCATTAGTCT
3' ss Score
2.55
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TGTACTTATATAGAAGTCGATCAGGTTCCTGAAACATATGCTGTTGTTCTTAGTCGCCCAGCTTGGCTGTGGGGGGCAGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTATCTGGGGAAGAGAAGATATTTCTAAGGAGGAGGCACTTCTGGGCATGGACCTTGTCAG
Seq A exon
TCTGAGCGCATGGCTCTATCTACACAATCCTCACTGCCAAGCATGAGAACGGAGTTTCATCTCCAGTGCTCACGTGCATCTGCAACAAAACCAGCGTTGGGGAAGCAGAAGCACGCCGGCTCCTGGGCTCGCTGATTAGCTACTCTAGCTTAATGG
Seq C2 exon
GCTCGGCCTTGAAAGAGCTGATACAGCTGAAAAAGCTCTCAACGTCATTGTTGACTTATTAGGAAAATATGGCCAAGGTGGAAACTGTGCAGAGGGTGAAGAATTCAGCTATTATAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATTCTGGAGACTTCAGGGAAGTTCTGGGCAGCAGAGAAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(24.2=100)
A:
NO
C2:
PF0357710=Peptidase_C69=FE(26.6=100)
Main Inclusion Isoform:
ENSRNOT00000081881fB13013
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATGAGGCTATCTGGGG
R:
CTGCCCAGAACTTCCCTGAAG
Band lengths:
254-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]