RnoEX0078703 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60029646-60032771:+
Coord C1 exon
chr3:60029646-60029842
Coord A exon
chr3:60030375-60030387
Coord C2 exon
chr3:60032562-60032771
Length
13 bp
Sequences
Splice sites
3' ss Seq
AACGTTGGACTGAATTCCAGAAT
3' ss Score
3.61
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GCTCGGCCTTGAAAGAGCTGATACAGCTGAAAAAGCTCTCAACGTCATTGTTGACTTATTAGGAAAATATGGCCAAGGTGGAAACTGTGCAGAGGGTGAAGAATTCAGCTATTATAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATTCTGGAGACTTCAGGGAAGTTCTGGGCAGCAGAGAAAGTCCAAG
Seq A exon
AATTGTATCACGT
Seq C2 exon
GAGTTCGTAATATTTCCAATCAGTTTTCCATAACAACCAAGATTGACCGGGAGCATCCAGACATGAGGAACTATGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAGGAGTTCGATTTTGCTGCAGCGTATTCTTACACTGACACGGCCACAATGATGACTTCACCAAGCAGATACTGCCAGGGCCACAAGCTTCTGAATAAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(26.6=100)
A:
PF0357710=Peptidase_C69=FE(2.3=100)
C2:
PF0357710=Peptidase_C69=FE(28.2=100)
Main Inclusion Isoform:
ENSRNOT00000081881fB13014
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGGAAGTTCTGGGCAG
R:
GATGCTCCCGGTCAATCTTGG
Band lengths:
93-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]