RnoEX0078821 @ rn6
Exon Skipping
Gene
ENSRNOG00000018876 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:RGD Symbol;Acc:1305930]
Coordinates
chr3:3830020-3830989:-
Coord C1 exon
chr3:3830916-3830989
Coord A exon
chr3:3830476-3830538
Coord C2 exon
chr3:3830020-3830082
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTACTGAGGGTGAGGAC
3' ss Score
-8.89
5' ss Seq
GGAGTCAGT
5' ss Score
-2.51
Exon sequences
Seq C1 exon
CTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTAAGTGAGGTTCAGAGCTTCTCTGAAACTCAAACAGAAAT
Seq A exon
GACGCTCGAACGGAAGTTGGAGGCGAAGATGATCAAGGAAGAGAGTGACTTCCATGACCTGGA
Seq C2 exon
AAACGGGCTGTAAAAGCAGAAAATCATGTCATGAAGCTGAAACAGGAAGTAAATTTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018876-'15-16,'15-15,16-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057016=WEMBL=FE(12.9=100),PF0076914=ERM=FE(13.3=100),PF131661=AAA_13=FE(15.3=100),PF0026115=Tropomyosin=FE(19.5=100)
A:
NA
C2:
PF057016=WEMBL=FE(10.8=100),PF0076914=ERM=FE(11.1=100),PF131661=AAA_13=FE(12.7=100),PF0026115=Tropomyosin=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGATGAAAACTCTAAGCTCAGA
R:
GGAGCAAATTTACTTCCTGTTTCAGC
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]