RnoEX0078981 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75172363-75178305:+
Coord C1 exon
chr13:75172363-75173978
Coord A exon
chr13:75174595-75174715
Coord C2 exon
chr13:75177963-75178305
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTGAGAGAAAACTTTTCAGTGC
3' ss Score
-2.34
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCACAACAGAGTGACTTTTGAAATTACCTCTGGCTTAATGACCAGTTCACAAAACTCTTGACTATTTCATAATCAGCTCTGGGAAGCCCTGCATTAGGGAGCTAGCTATAGCTAGAGTACTAACACACTTCTTCGCTAGTCTTCTTTGCAAAATTTTGGGTAAGCCACTATTCTGTAGCTCTTAGTTTTATCATTTTTTTTAAAAGTAAAGTTTACTTAGATGATCTCTTAAGATTCTTTTTATTGTTAGCACCCCAGGAACGCAGCCACTGTGATAAGCTGAGTCTAATGCTGTCGTCTTTAAGCAATGAGAATTACGTCAGAGTTTTATGACTGGAATTCTGATGTAGAAAAACATAATCCGATGTGGAGTCTGTTTGATCATTAACAGCATTCTGATTCCTGCCTTCAATGTCTGTGCCCTTCTCCAGTGCCTCTTCCCAGAGAGATGAAAAGAATCAATGCAGCCACTGGTGAGCCAGACCTCACGGCCTAGCATG
Seq A exon
TGCCTTCAGTTCAACACTGGGACTCAAATTCCCCTCAGCTAGAAAACAGAGTCGACTGCATGACAAGAACCAAGTGGGGGTGAAAAGCATGGGTGAGGGAAACCCAGACCGGACAATCCAG
Seq C2 exon
GAAATTAAATAATTACATAACAACCTCAAGACCCAAAGGGGGAAAAAATCAAAGGGTCAGAGATGGAACTTTGGGTTCCTCAGACACAAGGAAGGACCACGGGACCATCAAGGGATGCAAATAGAAGACTTCAGAGTGGACATTATAGACCCCGTCCTCACCCTCAGTACAGCGGAGATAACTACCACCAATGGCAGGATACCCACAAGAACTCAAAGCCACAGCAGGACCCCAGGGATGACCACCAACAGCCACACTATGTACCCAGGAGTGGGGAGTGGTCCCAGCCTGTGTCTGGAGCTGACTACTTGAAAGGATCTTATCCCAGTCACCCATACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATGCAGCCACTGGTGAG
R:
GTGGGTATCCTGCCATTGGTG
Band lengths:
249-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]